PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S01710.50
Common NameJCGZ_06664, LOC105635284
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family NF-YB
Protein Properties Length: 147aa    MW: 15960.8 Da    PI: 5.8182
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S01710.50genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB186.91.5e-5825122198
          NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                    vreqdr+lPian+srimkk+lPan+ki+kdak+tvqecvsefisf+tseasdkcq+ekrktingddllwa+atlGfedy+eplkvyl++yre+eg+
  Jcr4S01710.50  25 VREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSEASDKCQKEKRKTINGDDLLWAMATLGFEDYIEPLKVYLARYREMEGD 120
                    69*********************************************************************************************9 PP

          NF-YB  97 kk 98 
                    +k
  Jcr4S01710.50 121 TK 122
                    75 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.2E-5520130IPR009072Histone-fold
SuperFamilySSF471136.21E-4128130IPR009072Histone-fold
PfamPF008081.2E-283195IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006151.9E-215977No hitNo description
PROSITE patternPS0068506278IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006151.9E-217896No hitNo description
PRINTSPR006151.9E-2197115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MAENPTSPAG GSHESGGEQS PHSGVREQDR YLPIANISRI MKKALPANGK IAKDAKDTVQ  60
ECVSEFISFI TSEASDKCQK EKRKTINGDD LLWAMATLGF EDYIEPLKVY LARYREMEGD  120
TKGSARGGDG SAKRDPIGGL PGQNPQF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-4824116193NF-YB
4awl_B2e-4824116294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4824116294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR2322720.0KR232272.1 Vernicia fordii nuclear transcription factor Y subunit B-1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012073719.11e-107PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1
SwissprotQ8VYK41e-79NFYB8_ARATH; Nuclear transcription factor Y subunit B-8
TrEMBLA0A067LFV21e-107A0A067LFV2_JATCU; Uncharacterized protein
STRINGPOPTR_0008s04440.19e-99(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25453382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.36e-81nuclear factor Y, subunit B8
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]